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Hey I almost forgot, it’s the blog’s second anniversary! What the hell happened this year?

Stomach-Churning Rating: there’s an 8/10 photo of ostrich guts here; otherwise 2/10ish.

I bring you tidings from the past and future!

I bring you tidings from the past and future!

This was the Year of the Rant, and I enjoyed ranting to you on this blog. Sometimes you ranted with me, and that was even better. It kicked off with that cat documentary that spurned me in a feline dismissive fashion, then I lit off on documentaries in general and how they should give more back to scientists (what a discussion in the comments!!!!). Ooooh that felt good. And helped me sort out my thoughts about the topic. And after then, I got paid more often and still did a lot of documentaries– if you haven’t been watching Secrets of Bones on BBC4, you should be weeping bitter, bitter dregs (and be scrambling to get access). Catch me tomorrow (Tues) night with some of our emus! They paid me reasonably and in return I worked hard for them; before, during, and after filming, and I think we all felt good about it. Or I did anyway. The show is excellent, so I feel even better!

Sneak peek from BBC4's Secrets of Bones episode 3... recognize anyone?

Sneak peek from BBC4’s Secrets of Bones episode 3… recognize anyone? (from their website)

But no ranting palaeo-related blog would be complete without a good T. rex rant, and I did that this year. Took a big dump on the scavenger-predator non-troversy. That went over so well, Slate picked it up– I never had expected that to happen! I also appreciated how many colleagues joined in to condemn the senseless perpetuation of this dead issue by the media and a few scientists.

There were also some posts on more introspective things, like the feeling of being lost that pervades both visiting a strange foreign city and doing science. And like how science needs both the qualities of a Mr Spock and a Captain Kirk. Those were fun experiments in combining  a personal, internal experience with a broader message.

Darwin greets Chinese visitor Microraptor in my office.

Darwin greets Chinese visitor Microraptor in my office.

When I asked for suggestions last year, you wanted more coverage of other people’s stuff, and so I did that to a degree, reviewing the All Yesterdays and Unfeathered Bird books. And then I fell off that wagon, which I may come back to. But along the way I realized I don’t enjoy writing about papers that other people have already published because, generally, I then lack the personal experience of doing the science and showing it in progress, which is what this blog tends to be about and what excites me on a personal, visceral level. Once the paper is out, I feel like the cat is out of the bag and it’s not as fun to talk about unless it’s totally mind-blowingly (A) cool or (B) idiotic. Anyway, I might do a solicited post if someone gets me excited about a paper before it comes out, or who knows, I may change my mind.

Entirely unfeathered Indian peafowl in matching views.

Entirely unfeathered Indian peafowl in matching views, with Unfeathered Bird’s author-illustrator.

I also posted on a fabulous blog that more people need to hit, because you may be surprised just how fascinating it is- Veterinary Forensics. I get the feeling often, both on my blog and from scientific colleagues, that veterinary anatomy/pathology issues are seen as “lesser science” than basic, even descriptive anatomy. Somehow, insanely weird diseases or pathologies don’t excite people as much as insanely weird “normal” anatomies. I know there are exceptions to that generalization, but I think it’s a common (mis)perception people have, and part of it is likely because those fields (veterinary medicine and zoology, for example) are historically separate, and people tend to see anatomy and pathology as separate things- as opposed to points along a continuum. Since coming to the RVC, I have come from that kind of a misperception to one in which pathology enormously enriches my understanding of form, function and evolution. I also love the “applications of basic science to helping animals live better lives” angle. We should all be trying to do that as scientists, but from time to time I notice that it isn’t taken seriously (I even get reviewers’ comments bluntly stating that it’s none of our business as basic scientists, or for anatomy/experimental biology journals to mention!). Whoops better stop there or I’ll be writing a new ranty post!

Can't get enough of this -xray GIF, so here it is again.

Can’t get enough of this x-ray GIF, so here it is again.

Darwin Day got into some of the vet-y issues regarding feet, in a post on hooves and then another on pigs’ feet.

Toward the end of the year I got some guest posts going, by two main people from my team: Sophie Regnault on rhino feet, and Julia Molnar on crocodile spines. I liked those posts a lot, and so did you, it seems, so there will be more of those coming in year 3. Quite a few are planned already.

One of my favourite papers I’ve ever done came out this year, by Vivian Allen et al. on dinosaur body shape/postural evolution, and that went nicely as a blog post with tons of extra context and stuff. Digital 3D dinos, what’s not to love?

I was on sabbatical for much of the year, so I was posting a lot about patellae (kneecaps) and how fun they are to study, which led to posts about basal bird skeletons and more, like Darwin’s chickens and a joke about cake that only I seemed to find funny, and ending with a grand summary of avian kneecaps. I also reported on some new (post-sabbatical) research, still ongoing, with Dr. Stephanie Pierce and Dr. Maedeh Borhani at the RVC, on how salamanders walk. During Freezermas, I plugged our new comparative cat project.

The mesenteries are so gorgeous!!!!!!

The mesenteries are so gorgeous!!!!!!

Speaking of Freezermas: It happened, it was terrifying, and we’ve all grown from the experience of surviving it. I had a blast dissecting that ostrich, and the x-ray pics were a hit with everyone, too!

Then there was random “freezer love” and assorted posts to give insight into the daily life of a freezer manager, such as doing an inventory and reflections on childhood. I snuck in a tour of Dublin museums and the amazing Crocodiles of the World near Oxford. I meant to do more of those “anatomy road trip posts” and still aim to.

And we ended the year by ending the ongoing drama of the Mystery Anatomy competition, starting off a new year with a new scoreboard. We got more poetic and lyrical in 2013 with the answers to those mysteries, and that will continue (groans from those who are poetically challenged).

Elephant skull mystery x-ray

Elephant skull mystery x-ray

Some brief numbers: view-wise the blog has been pretty close to last year; about 87,000 views in the past 12 months for a total of almost 200,000, wow! This year, Twitter just barely edged out Facebook for bringing people to the blog (3,134 vs 3,022 clicks) but then geenstijl.nl bizarrely brought 2,732! There was no big Reddit or other social media site moment this year, but various sites and links continued to bring in a steady flow of visitors to add to the Google-search-firehose’s. Thanks to folks who linked here!!!

What google searches brought people here the most often? The top 3 are the most interesting; the fifth one just makes me laugh because I’ve never discussed Deepstaria enigmatica anatomy here, but will continue to promote people finding the site by searching for it, if only to annoy cnidariologists:

rhino 83
giraffe 76
camel anatomy 62
what’s in john’s freezer 60
deepstaria enigmatica 56

I’m a little surprised “elephant” and “dinosaur” don’t bring as many searches here, but there are probably more sites about those animals and hence I get fewer of the hits. Looking forward to more hits on “ostrich anatomy”…

My two top rants were the top posts this year, and that’s no surprise given the comments and other attention they got. Thanks for helping by participating! Those were nice group-rants. Healthy and vigorous. Shockingly, a poetry round of mystery anatomy came in 3rd! People just liked the chickens + bones + poetry. Those, and some hits from year 1, broke the 1000-views marks.

Americans came here in a 3:1 ratio to Brits, which means that Brits punched above their weight per capita (~5:1 ratio)! Canadians, you tried, too. Here, have some back bacon of dubious provenance. 🙂 Saint Kitts and Nevis with 670 views, wow! Very unexpected- you beat Italy and many others!

Most importantly, the blog has been about sharing my passion for anatomy (as preserved via freezers). I shared a conference talk about this subject here, using the blog as a prime example, to a warm reception. I want to try experimenting in new ways to use the blog to share things this year. I think you will like what I (we!) have lined up. Thanks for showing up and staying with me!

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I’ve been either super busy or on holiday and low on creative energy, so although I have five or so blog posts frozen in my mind, I haven’t progressed them far enough yet. To whet your appetite, they include a review of the bird book AND exhibit “The Unfeathered Bird”, a summary of our recent PeerJ paper on croc lungs (Schachner, Hutchinson and Farmer; see here and also here), a rant on optimality in biomechanics, and a summary of a new and (to us) very exciting dinosaur paper that is very-soon-to-come, and something else that I can’t remember right now but it probably is totally awesome.

But here’s an interlude to keep you stocked on freezer-related imagery. We did an annual inventory and massive cleanup (and clean-out!) of all our freezers, throwing out some 300ish chickens and other odds and ends, and finally loading all cadaveric material I have into a single database, which I’ll share here shortly! It was a long time coming, and took ~6 people about 4 exhausting hours; last year’s attempt was just a holding maneuver by comparison. Here is how it went.

Freezersaurus gut contents being sorted.

Freezersaurus gut contents being sorted. A cold drizzle was falling. It was not pleasant work.

Large specimens, especially horse legs, being moved into the walkin freezer.

Large specimens, especially horse legs and the remnants of an ostrich hind end or two, being moved into the walk-in freezer.

Research Fellow Jeff Rankin wrangles some horse legs into their freezer.

Research Fellow Jeff Rankin wrangles some horse legs into their freezer. I like this photo for his knowing smile as he stands amidst horse limbs spread akimbo.

Postdoc Heather Paxton helps sort out elephant foot tendons and "predigits" in their freezer.

Postdoc Heather Paxton helps sort out elephant foot tendons and “predigits” in their freezer. Nice view of our long line of chest freezers in action, too.

And, as an extra reward if you made it to the end, here’s what I was doing for the past week (check out my Twitter feed for more)– seeing amazing art and architecture and food and stuff in Rome, which is just dripping with wicked anatomical portrayals (e.g. in this image; click to embiggen and oggle the classical physiques).

Rome's Trevi Fountain

Rome’s Trevi Fountain

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Chilly 1st Birthday to You, WIJF Blog!

It has indeed been a year of blogging now! And it has been a very fun year at that. Here is my look back at past events on this blog.

Stomach-Churning Rating: 8/10- some heavy-hitters in here, but to regular Freezerinos they will mostly be familiar.

giraffe-leg-CT

This blog’s first image and subject: giraffe legs and modelling.

NUMB WITH NUMBERS:

First, the usual consideration of statistics: wow! I never expected the blog to be this successful! I’d sort of hoped as much, but for such a niche blog it was far from guaranteed in my mind. However, the initial response was overwhelming: 4210 hits in its first month, many of them on the first day!

Since then, although the usual number of blog views are around 100-200/day, there are now 76 blog followers,  and a total of ~111,000 views! According to ImpactStory and Topsy, the blog has had 48 tweets (7 of them “Influential”), 111 Facebook likes, 105 Facebook comments, and 53 Facebook shares. Nice!

The biggest day was April 27, 2012: 10,564 views– ZOWIE! That was fun. More about that below. I’m amused that my very first post only has 85 views even to this date, but it didn’t really contain much.

Visitors tended to come from browser searches (23,243 hits!), in particular hunting for images of the feet/limbs of elephants, rhinos, giraffes and other megafauna (looks like my intended purpose worked– vets and other anatomists want this rare information!). Oddly, from a few of my tweets that got listed on my blog, “deepstaria enigmatica” (remember that craze?) became one of the most common terms (214 to date!) that brings people here via the intertubez. Giraffe anatomy and patella are also major sources of search strikes. Interesting!

But don’t dismiss the power of Facebook (4,399 oggles on WIJF total) versus the somewhat surprisingly smaller impact of Twitter (2,036 pings). I say surprising because I push the blog much harder on Twitter than anywhere else, but Facebook pages like Perez’s Veterinary Anatomy (>33,000 members/likes!) have done far more than my mere ~1,300 Twitter followers can. Other blogs like the Chinleana palaeo blog (1,008 palaeo-hits here) and the ubiquitous Pharyngula (791 athe-hits) have helped a lot, too– thanks to all those bloggers and science writers who have linked to my humble little blog!!!

Who are YOU? You mostly come from the USA and UK, of course, but Japan is 3rd on my visitors ranking, followed by Canada, Germany, Australia and the Netherlands. Russia: we want more of you, too. Monaco, Nauru, Tuvalu and Liechtenstein- you as well, please! North Korea, keep trying.

So this is all great; really great. I’m rather amazed.

Definitely the blog has succeeded in what I aimed: to present the fun, awesome, curious side of anatomy in all its raw glory, using the freezer as a common theme (although I’ve felt free to deviate from purely freezer-based science when it pleases me). And it has crystallized for me just how important and powerful a single picture of anatomy can be.

That is what this post emphasizes- the pictures of the year from this blog. Enjoy the walk down morphology lane.

MOST POPULAR POSTS AND PERIODS:

Certainly the post; indeed the single photograph; that stands out for this blog is that of the elephant with its guts spilling out, from my Inside Nature’s Giants post on 13 April (so it took 2 weeks to gather momentum before the views spilled out like so many bowels). In a single day I had thousands of visitors from Boing Boing, Metafilter, Reddit, Gizmodo, io9, pinterest (which still sends me a lot of hits daily), and more! So here once again is that beastly image:

Stunning emergence of The Guts

Stunning emergence of The Guts

The post even got re-discovered by Reddit (the dreaded repost), leading to another surge. 24,330 views of the blog post so far!

A distant second to the elephant guts in terms of broad popularity was the “how thick is a rhino’s skin?” image; another Reddit favourite; with 4,719 views of the post from World Rhino Day 2012:

Skinning a White rhino forelimb

But also the “Animal: Inside Out” review did very well here (2,338 views to date), which was quite gratifying because I did a lot of detailed but enjoyable research for that one. It continues to bring people here, long after the NHM exhibit closed (it is now at Chicago’s excellent Museum of Science & Industry), which is quite cool.

Thanks to the poll results from last week, I’ll be doing more exhibition reviews like this– see below. My favourite image from that post is this: the bull (but don’t forget the camel, either):

Great exhibit. No bullshit.

Great exhibit. No bullshit.

Once we’re past those top 3 pages, things settle down to numerous posts with ~1000 or less views to date– highlights include the big rhinos and giant rhinos post: Rhino humeri

And the post on WCROC the big Nile crocodile got a fair amount of attention, as well as my posts on our Ichthyostega research and vertebral evolution discoveries, naked dinosaurian ostriches, chicken meat, giraffe anatomy (many pages, but this one is relatively most popular), and then the series I did on the RVC’s Anatomy Museum (first post here).

Here are a few thumbnails of the greatest hits from those posts and some others– which do you remember and why?

DSC_0203 Mystery Dissection 3  DSC_0963a  Whole 2 Gratuitious Melanosuchus (black caiman) shot. chicken-viscera-myopathy Gratuitious rhinoceros leg.  Kitty Hedz it is defunct rhino_front  hippo_L_knee Wolpertingers Jenny Hanniver- "face" windfall-croc (4) The nuchal ligament, which runs along the spine and helps hold up that long neck.  The left cheek's teeth-- and check out the spines on the inside of the cheek! Keratinous growths to aid in chewing, food movement, digestion etc. These extend into the stomach, too! Amazed me first time I saw them, in an okapi (giraffe cousin). my-brain2 If this post bummed you out, just focus on these contented cats. An offering to The Master

…and we’ll never speak of the freezer-penis again…

Of course, there were the puzzles and mysteries, too. When I think of those, the image I think of most is this one; one of the first. Remember what it is? DSCN0880

I’ll be defrosting some new ways to puzzle you this year.

Personally, my post about my brain means a lot to me (and any zombies out there) of course, but also I’m rather keen on my entry on elephant biomechanical models (cheeseburger units!), and the posts about elephant foot pathologies and the rhino crisis also carried a strong, semi-personal urgency.

I also featured a lot of movies here- if you want to peruse them, they’re always on my Youtube account here— >22,000 views so far; not bad. One of my favourites is this one, of a pumpkin being smashed in slow motion:

Furthermore, in terms of effort writing and researching, my very detailed post on chimeras and Jenny Hannivers and such is very memorable for me, and more recently the Freezermas series was a huge undertaking– which gave me needed breaks but also soaked up a lot of time during some intensive grant-writing!

I predict that the pangolin post, in particular, will proceed to provoke a promiscuous proportion of people to pass by this blog.

But the WIJF blog has always been about including you too, my loyal Freezerinos– what about you? Please thaw out your memories of past posts and comment below on what sticks out as your favourites and why. I’d love to hear about it!

Eggs: full of bountiful promise and symbolism for the future.

Eggs: full of bountiful promise and symbolism for the future.

THE FROZEN TUNDRA OF THE FUTURE:

A final duty for this post, heralded by my poll earlier, is for me to peer into my frosty crystal ball and report on the future of this blog:

As promised, it will continue for a year or more; as long as I feel I have something new to say and someone to tell it to.

The poll convinced me, as I’d hoped, to venture into more reviews of museum/other exhibits that I visit locally or abroad. Now and then I’ll also tackle a new or classic paper, good or bad, that tickles my anatomical fancy, and give my perspective on it. The mysteries and puzzles will continue; I was checking in that poll to see what the enjoyment level was, and it is clearly still reasonably high. I’ll continue presenting my own research here, especially when it’s quite anatomical (stay tuned for something new and VERY exciting in a few weeks!). As I’d hoped, hardly anyone found the self-promotional aspect of this blog (presenting my own research) to need downplaying, but I think over the coming year you’ll see more diversity of what is presented in terms of current research by anyone. I welcome suggestions of cool anatomical science to cover. I will try to cover mostly postcranial anatomy, since other blogs/Facebook pages already do such a good job with cranial morphology, and postcranial is much more my expertise.

But generally I will just keep on keepin’ on with what I’ve been doing!

Examples of what’s yet to come: some close encounters with my collection of specimens– the cast of characters that populate my freezers. What exactly is there, and what are the odd things I haven’t yet even mentioned here? I’ll also just grab some specimens and thaw and dissect them for the purpose of blogging it (live-tweeting too?), and going through some of the anatomical talking points for each. And much more! You may even see Cryogenics, Yetis, or Snowball Earth come up in features touching on the theme of freezerness, general science and critical thinking.

But– IMPRESSIVE IMAGERY, again, is what WIJF is truly about. It’s what I’m about, too- I became an anatomist partly because the visually arresting nature of anatomy grabbed me and won’t let go.

Here are some NEW images to ponder. One is… unpleasant; one is more abstractly technical; but both are about the bewitching power of anatomy. The coming year will run the gamut between these extremes:

PigsHeads
PURPLE EMU WHOLE 1 _Se1_Im002

Thanks, everyone here, for helping to make blogging fun for me and for others, and for enduring my self-indulgence – especially in this post – but I hope you enjoyed a ramble through this past year in my freezers.

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We are coming up on the 1 year anniversary of this blog. I’ll discuss that anniversary and do a retrospective when the time comes; I have plans…

But first: Frosty feedback time! I want to involve current blog readers in guiding where this blog goes in the future. I renewed the URL for another year, so there will at least be that much more, and probably more than 1 year, since I have plenty of ideas and energy left and am enjoying this.

Let’s let the poll do the talking – and you, too! I hope for some discussion- please, your constructive criticism and suggestions! What do you honestly want more/less of, or totally new, within reason? Maybe I haven’t thought of everything I could do. In fact, I’m sure I haven’t.

3 choices at most per user (you don’t have to use all 3), please. And I think the poll will allow new entries (“Other”) to be added (EDIT: Hmm, doesn’t work the way I thought it did. If you do click “Other”, please add a comment below explaining it. Otherwise I don’t know what “other” means… EDIT EDIT– OK, if you’ve read this far, I will find out what you put in the “Other” box (it shows up in my WordPress admin stuff) but it isn’t made publically visible- see here if curious).

If there’s something you feel strongly about, such that 1 vote just doesn’t cut the mustard, speak out in the comments below. (Sorry, no, the bad jokes and terrible puns are here to stay 🙂 )

Go for it! I’ll let the poll run for a week or so. Blog lurkers, please de-lurk! I want to hear from you, too.

Thanks,

John of the Freezers

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A short(ish) post, but to me an important one. As I’ve mentioned here before, and still mean to write a detailed post on, I’m on a 1-year Royal Society Leverhulme Trust senior research fellowship (pause to breathe… long phrase there!) to study the mechanics and evolution of the kneecap (patella) in birds. Knees are very cool, and the patella is one of the coolest parts of the knee. My fellowship is aimed at returning to my roots, i.e. my PhD research on theropod dinosaur hindlimb evolution (anatomical and functional), to focus in great detail on just the patella (this, not this).

The patella is a mysterious structure: a sesamoid bone like I’ve argued elephant predigits are, and probably the best known sesamoid, but still quite enigmatic– especially in non-humans and most particularly in non-mammals. Why did it evolve three different times, at least? What mechanical/developmental environment encourages it to form? Why don’t some species have them? Does the presence of a patella tell us anything about posture, gait, or anything else? Why did no giant dinosaurs evolve patellae?

Anyway, I now have a related PhD studentship that I need a great EU/UK-based student to apply for, and I’m casting a wide net. It’s a very, very freezer-based PhD: imagine cutting up the knees of the frozen zoo of critters that I’ve shown on this blog already, to your heart’s content! And studying fossils, and doing histology (cool imaging techniques with RVC faculty Michael Doube and Andy Pitsillides, along with bone uber-guru Alan Boyde), and conducting experiments with real animals, and computer modelling both experimental and fossil data… this PhD has it all.

Here are the details. If you know anyone in the EU/UK looking for a good PhD that seems to fit the bill very well, send them my way please!

We now return you to your regularly scheduled frozen organisms… and there is a fun post coming tomorrow!

The knee of an emu from my freezer, showing the many muscles and other tissues that connect to or surround the patella. It’s complicated, and that makes for fun science!

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Much prettier now!

With the help of Heinrich Mallison of dinosaurpalaeo and his student Sebastian Marpmann (now having finished the Great Giraffe Deconstruction), I did a quick cleanup and reorganization of the big walk-in freezer we’ve all come to know and love as Freezersaurus. This had to be done because some of the big stuff was becoming a terrible obstacle to cross in order to get anything from inside; cue health-and-safety paperwork nightmares. And yes, the ice penis is now gone. End of an era…

All photos henceforth by Doktor Mallison:

Emerging from Freezersaurus; most big stuff removed (note our giraffe's metacarpus trying to escape, on right side)

The big stuff. Emus, elephant feet, too much giraffe (metacarpus continuing to sidle away), and horse legs.

Carnage remaining inside; needed to be taken out gradually and reorganized, to make more space on floor for intermittent human presence (i.e. walking in).

Elephant feet, mystery giraffe pelvis, oh my!

For ME!?!? Aww shucks, you shouldn't have. Reorganizing the small stuff on shelves. PhD student Mike Pittman makes a guest appearance, delivering crocodile vertebrae.

Sebastian poses with giraffe buddy. We emphasize the Buddy System when dealing with Freezersaurus; she is a treacherous hostess. Note that Sebastian has also cunningly halted the abscondence of the giraffe metacarpus.

Job done! Farewell Freezersaurus! You look mahvelous! Wall of archosaurs on the left; wall of synapsids on the right, and sundry giant mammals in the middle.

And so we finished, and so you’ve now had a very intimate look at Freezersaurus too! Don’t you feel lucky? 🙂

This post was brought to you by the wildly popular Nü-Folk-Metal post-bluegrass band Mystery Giraffe Pelvis, and the letter K.

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Hell Freezes Over

I confess to hipsterism or some other fatal disorder; I’m no Luddite but I am hesitant to jump onto popular techy trends. (Although I was writing webpages for www.ucmp.berkeley.edu as early as 1995!) Back circa 2006, I maintained I’d never board the bandwagon and sign up for Facebook, then I relented. Even into the spring of 2011, I was a staunch non-Twitterer, then I caved.

But all along, I’ve maintained I have no great idea for a blog and don’t have time to blog. So here I am. Maybe both those things are still true! But we shall see what crystalizes here…

Aside: the “frigorific” in the Links section is a real word, and refers to extreme coolness. Bear with me. I’m gonna milk the limited set of puns that this blog’s theme relates to, even if only tangentially so. Some freezer-burned puns may result.

In celebration of my first blog post, cue the thematic music! (I am aware of its photographic, not frigorific, context, and there are plenty of alternatives, but I like the celebratory tone here– please sing along while sporting hideously outdated fashion choices!)

Awright, let the Blogging Begin! Hopefully not at a glacial pace… First up: Giraffe-a-Thon! And be sure to check out the “Welcome to My Freezer” tab at the top, for important WIJF information.

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