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Archive for November, 2016

A quick heads-up that we just posted on our sister blog Anatomy To You, about a new open-access paper we’ve published on the skeletal anatomy of the tuatara Sphenodon. Lots of cool images you can’t see anywhere else are there!

In focus: The big picture of little bones in tuatara

I give it a Stomach-Churning Rating of 3/10- some picked specimens of tuatara but they’re still cute, not nasty, I’d say.

AND, like the Cool-Whip or vanilla ice cream atop your leftover pumpkin pie, there’s an added delicious bonus: a huge dataset of microCT scans from 19 tuatara specimens, free to access here:

https://osf.io/bds35/

We are VERY pumped up about getting this paper and dataset released, so we are spreading the word as wide as we can!

Sayonara.

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Thanksversity

First, a moment of silence for Freezersaurus (2009-2016); Rest In Recycling. This week we close the door on our years of arctic antics together. A new, uncertain relationship is beginning, with our diversity of icy inhabitants hanging in the balance. A future post will provide an update.freezer

Stomach-Churning Rating: 2/10; no photos, but some politics; take it or leave it.

Speaking of diversity, it’s Thanksgiving in my home of the USA and thus a time for reflection. Such reflections this year inevitably turn to current global events, in which “diversity” has come up in many ways, and then back to my own life, and back again. It certainly has been a year for reflection, and – like many others – my current taste for dystopian tales mirrors that reflection.

In (the United States of) America, Thanksgiving is a tradition of (at least implicitly) commemorating the meeting of two cultures (Native and newly-immigrated American/Puritan) and the eventual fusion/phagocytosis of those two diverse cultures into something new; leading to the USA of today and its diverse inhabitants and cultures. We spend time with family and have awkward conversations or cheer on sports teams or take engorgement-induced naps. We eat diverse foods of the harvest time and thank the spirits/divinity/cooks for their bounty. Many Americans, across our cultural diversity, take time to ponder what they are grateful for. I’ve always loved this holiday because of that, and my fond memories of past Thanksgivings.

And so I am drawn to reflection on the giving of thanks, and the significance of diversity, and I choose today to type some words that echo my thoughts.

I am grateful for what diversity we have. My life is enmeshed with that diversity: I study biodiversity and marvel at the diversity of nature, which both bring great joy to my life. I worry about the state of funding for, and reciprocally the appreciation of, the scientific study of nature and the human value placed on biodiversity, and the implications of those for the future of diverse life on Earth, both human and non-human. It is well known that they are all under threat, in diverse ways, from sociopolitical and other factors.

To me, human diversity (cultural, ethnic, other) is part of this natural diversity; it has evolved and will continue to, for as long as it exists. It is not going away. I am grateful for that human diversity. Some parts of it bring me terrible revulsion, and those are the source of much worry, and our own nature is their source, too. But it brings my life great meaning to interact with different people, to learn new things from them, and to share experiences in more positive ways. I am curious about all of these things, and because of that curiosity in 2016 I have learned more about that human diversity than I ever have before. Some of that learning has been about the dark side of humanity, from political and social trends (or glaring exposure of longstanding biases) in the UK and USA and more globally. Yet also some of that learning has been about the virtues of human diversity and realizing how much solidarity I feel (and have long felt) for those who are trapped in disadvantageous positions along the fault lines of confrontations between different components of that diversity. It has brought out some of my best and worst feelings.

Like a snail, this year I feel that I have periodically been moving forward to inspect the greater world, enjoying it for a time, then recoiling once I encounter the xenophobia, anti-intellectualism, and selfishness, which make me want to stay inside my shell. Long have I inhabited that shell in 2016. I’m not proud of those feelings and that tenancy in my little partition of this world, but they are what I’ve been able to manage. Today, I am trying to appreciate the broader picture and remind myself of where there is still goodness in the world, and how cycles of diversity can stabilize. We have choices to make about how we control those cycles; we humans are unique in our control of them; and those choices are best poised on the understanding that comes from curiosity. It is there in that diversity that Darwin celebrated; “There is grandeur in this view of life,” and today I am thankful for the grandeur that does still remain around us. I am curious to view what grandeur that diversity presents next. We could all use more of that grandeur.

And thanks for reading this post.

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(Marcela with some furry friends; photo by Oliver Siddon)

(Marcela with some felid friends; photo by Oliver Siddon)

A guest post by Marcela Randau (m.randau@ucl.ac.uk)

Stomach-Churning Rating: 1/10; just bones and data plots!

It is often said that all cats are very similar in terms of their skeletal morphology (“a cat is a cat is a cat”). But is this really the case? It may be if only gross, qualitative anatomy is taken into consideration, i.e., if you just eyeball the skeletons of tigers and lions you might find yourself not knowing which one is which. But with huge advances in technology that allows for extracting detailed shape information off a structure (e.g., a skull) and for analysing this information (‘Geometric Morphometrics’), it has become more and more possible to distinguish between relatively similar forms – which may be from distinct species, separate sexes, or even just different populations of the same taxon.

And it is reasonable to think that cat skeletons might be a lot more different than what meets the eye, as for a lineage of apparently similarly built animals, with not that much variation in diet  (all cats are hypercarnivores) there is substantial variation in body mass (over 300-fold just in living species!) and in ecology across cat species. From the cursorial cheetah to the arboreal clouded leopard, felids present a wide range of locomotory adaptations. Yes, all cats can climb, but some do it better than others: think lion versus margay (yes, they do descend trees head-first). As hypercarnivores, all cats are meat specialists, but they also change with regards to how big their prey is, with a general and sometimes-not-so-black-and-white three-tier classification into small, mixed and large prey specialists. The rule of thumb is ‘if you are lighter than ~20-25 kg, hunt small stuff. If you are heavier than that, hunt BIG BIG things; bigger than yourself. And if you are in the middle ground, hunt some small-ish things, some big-ish things, and things about your size. Well, -ish’ – their prey size preference has a lot to do with energetic constraints (have a look at Carbone et al. 1999; and Carbone et al. 2007, if you’re interested in this). But the fun bit here is that form sometimes correlates quite strongly with function, so we should be able to find differences in some of their bones that carry this ecological signal.

Indeed, for a while now, we have known that the shape of the skull and limbs of felids can tell us a lot about how they move and how big their prey is (Meachen-Samuels and Van Valkenburgh 2009, 2009), but a large proportion of their skeleton has been largely ignored: we don’t know half as much about ecomorphology and evolution of the vertebral column. Well, it was time we changed this a bit! As the PhD student in the Leverhulme-funded ‘Walking the cat back’ (or more informally, “Team Cat”) project, I’ve spend a big chunk of my first two years travelling around the world (well, ok, mainly to several locations in the USA) carrying a heavy pellet case containing my working tool, a Microscribe, to collect 3-D landmarks (Fig. 1) across the presacral vertebral column of several cat species. And some of first results are just out! Check them out by reading our latest paper, “Regional differentiation of felid vertebral column evolution: a study of 3D shape trajectories” in the Organisms Diversity and Evolution journal (Randau, Cuff, et al. 2016).

cheetah-verts

Fig. 1: Different vertebral morphologies and their respective three-dimensional landmarks. Vertebral images are from CT scans of Acinonyx jubatus (Cheetah, USNM 520539)

Building from results based on our linear vertebral data from the beginning of the year (Randau, Goswami, et al. 2016), the 3-D vertebral coordinates carry a lot more information and we were able to describe how this complex shape-function relationship takes place throughout the axial skeleton (in cats at least) in much better detail than our prior study did. One of the difficulties in studying serial structures such as the vertebral column is that some clades present variation in vertebral count which makes it less straightforward to compare individual vertebrae or regions across species. However, mammals are relatively strongly constrained in vertebral count, and Felidae (cats; living and known fossils) show no variation at all, having 27 presacral vertebrae. So adaptation of the axial skeleton in mammals has been suggested to happen by modification of shape rather than changes in vertebral number.

Using a variety of geometric morphometric analyses, under a phylogenetically informative methodology, we have shown that there is clear shape and functional regionalisation across the vertebral column, with vertebrae forming clusters that share similar signal. Most interestingly, the big picture of these results is a neck region which is either very conservative in shape, or is under much stronger constraints preventing it from responding to direct evolutionary pressures, contrasting with the ‘posteriormost’ post-diaphragmatic tenth thoracic (T10) to last lumbar (L7) vertebral region, which show the strongest ecological correlations.

We were able to analyse shape change through functional vertebral regions, rather than individual vertebrae alone, by making a novel application of a technique called the ‘Phenotypic Trajectory Analysis’, and demonstrated that the direction of vertebral shape trajectories in the morphospace changes considerably between both prey size and locomotory ecomorphs in cats, but that the amount of change in each group was the same. It was again in this T10-L7 region that ecological groups differed the most in vertebral shape trajectories (Fig. 2).

pta-cats

Figure 2: Phenotypic trajectory analysis (PTA) of vertebrae in the T10 – L7 region grouped by prey size (A) and locomotory (B) categories.

So in the postcranial morphology of cats can be distinguished, changing its anatomy in order to accommodate the different lifestyles we see across species. But the distinct parts of this structure respond to selection differently. The next step is figuring out how that might happen and we are working on it.

While Team Cat continues to investigate other biomechanical and evolutionary aspects of postcranial morphology in this interesting family, we’ve been able to discuss some of these and other results in a recent outreach event organised by the University College of London Grant Museum of Zoology and The Royal Veterinary College. We called it “Wild Cats Uncovered: movement evolves”. Check how it went here: (https://blogs.ucl.ac.uk/museums/2016/11/17/cheetah-post-mortem/) and here (http://www.rvc.ac.uk/research/research-centres-and-facilities/structure-and-motion/news/wild-cats-uncovered), with even more pics here (https://www.flickr.com/photos/144824896@N07/sets/72157676695634065/).

References used here:

Carbone, C., Mace, G. M., Roberts, S. C., and Macdonald, D. W. 1999. Energetic constaints on the diet of terrestrial carnivores. Nature 402:286-288.

Carbone, C., Teacher, A., and Rowcliffe, J. M. 2007. The costs of carnivory. PLoS biology 5 (2):e22.

Meachen-Samuels, J. and Van Valkenburgh, B. 2009. Craniodental indicators of prey size preference in the Felidae. Biol J Linn Soc 96 (4):784-799.

———. 2009. Forelimb indicators of prey-size preference in the Felidae. Journal of morphology 270 (6):729-744.

Randau, M., Cuff, A. R., Hutchinson, J. R., Pierce, S. E., and Goswami, A. 2016. Regional differentiation of felid vertebral column evolution: a study of 3D shape trajectories. Organisms Diversity and Evolution Online First.

Randau, M., Goswami, A., Hutchinson, J. R., Cuff, A. R., and Pierce, S. E. 2016. Cryptic complexity in felid vertebral evolution: shape differentiation and allometry of the axial skeleton. Zoological Journal of the Linnean Society 178 (1):183-202.

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